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  Refereed Journal Articles:
  • A. Trapp, O.A. Prokopyev, "Solving Order-Preserving Submatrix Problem via Integer Programming," INFORMS Journal on Computing, accepted for publication, 2009.
  • A. Trapp, O.A. Prokopyev, S. Busygin, "Finding Checkerboard Pattern via Fractional 0--1 Programming," Journal of Combinatorial Optimization, accepted for publication, 2009.
  • O.A. Prokopyev, "On Equivalent Reformulations for Absolute Value Equations," Computational Optimization and Applications, accepted for publication, 2009.
  • M. Baz, B. Hunsaker, O.A. Prokopyev, "How Much Do We Pay for Using Default Parameters?," Computational Optimization and Applications, accepted for publication, 2009.
  • O.A. Prokopyev, S. Butenko, A. Trapp, "Checking Solvability of Systems of Interval Linear Equations and Inequalities via Mixed Integer Programming," European Journal of Operational Research, Vol. 199 (2009), pp. 117-121.
  • J. Rajgopal, Z. Wang, A. Schaefer, O.A. Prokopyev, "Effective Management Policies for Remnant Inventory Supply Chains," IIE Transactions, Vol. 41 (2009), pp. 437–447.
  • O. Seref, O.E. Kundakcioglu, O.A. Prokopyev, P.M. Pardalos, "Selective Support Vector Machines," Journal of Combinatorial Optimization, Vol. 17 (2009), pp. 3–20.
  • O.A. Prokopyev, N. Kong, D.L. Martinez-Torres, "The Equitable Dispersion Problem," European Journal of Operational Research, Vol. 197 (2009), pp. 59-67.
  • O. Shylo, O.A. Prokopyev, V. Shylo, "Solving Weighted MAX-SAT via GES," Operations Research Letters, Vol. 36 (2008), pp. 434-438.
  • C.A.S. Oliveira, O.A. Prokopyev, P.M. Pardalos, M.G.C. Resende, "Streaming Cache Placement Problems: Complexity and Algorithms," International Journal of Computational Science and Engineering, Vol. 3 (2008), pp. 173-183.
  • S. Busygin, O.A. Prokopyev, P.M. Pardalos, "Biclustering in Data Mining," Computers and Operations Research, Vol. 35/9 (2008), pp. 2964–2987.
  • P.M. Pardalos, O.A. Prokopyev, O. Shylo, V. Shylo, "Global Equilibrium Search Applied to the Unconstrained Binary Quadratic Optimization Problem," Optimization Methods and Software, Vol. 23/1 (2008), pp. 129-140.
  • S. Busygin, O.A. Prokopyev, P.M. Pardalos, "An Optimization Based Approach for Data Classification", Optimization Methods and Software, Vol. 22/1 (2007), pp. 3–9.
  • M. Min, O.A. Prokopyev, P.M. Pardalos, "Optimal Solutions to Minimum Total Energy Broadcasting Problem in Wireless Ad Hoc Networks", Journal of Combinatorial Optimization, Vol. 11/1 (2006), pp. 59–69.
  • H.-Z. Huang, P. Pardalos, O.A. Prokopyev, "Lower Bound Improvement and Forcing Rule for Quadratic Binary Programming", Computational Optimization and Applications, Vol. 33 (2006), pp. 187-208.
  • H. K. Fung, S. Rao, C. A. Floudas, O.A. Prokopyev, P.M. Pardalos, F. Rendl, "Computational Comparison Studies of Quadratic Assignment Like Formulations for the In Silico Sequence Selection Problem in De Novo Protein Design," Journal of Combinatorial Optimization, Vol. 10/1 (2005), pp. 41-60.
  • O.A. Prokopyev, H.-Z. Huang, P.M. Pardalos, "On Complexity of Unconstrained Hyperbolic 0–1 Programming Problems", Operations Research Letters, Vol. 33/3 (2005), pp. 312–318.
  • O.A. Prokopyev, C. Meneses, C.A.S. Oliveira, P.M. Pardalos, "On Multiple-Ratio Hyperbolic 0--1 Programming Problems," Pacific Journal of Optimization, Vol. 1/2 (2005), pp. 327-345.
  • S. Busygin, O.A. Prokopyev, P.M. Pardalos, "Feature Selection for Consistent Biclustering via Fractional 0–1 Programming", Journal of Combinatorial Optimization, Vol. 10/1 (2005), pp. 7–21.
  • W. Chaovalitwongse, P.M. Pardalos, O.A. Prokopyev, "A New Linearization Technique for Multi-Quadratic 0-1 Programming Problems," Operations Research Letters, Vol. 32/6 (2004), pp. 517-522.
  • P.M. Pardalos, W. Chaovalitwongse, L.D. Iasemidis, J.C. Sackellares, D.-S. Shiau, P.R. Carney, O.A. Prokopyev, V.A. Yatsenko, "Seizure Warning Algorithm Based on Optimization and Nonlinear Dynamics," Mathematical Programming, Vol. 101/2 (2004), pp. 365–385.
  • O.A. Prokopyev, P.M. Pardalos, "On Approximability of Boolean Formula Minimization," Journal of Combinatorial Optimization, Vol. 8/2 (2004), pp. 129-135.
  • O.A. Prokopyev, P.M. Pardalos, "Minimum $\epsilon$-equivalent Circuit Size Problem," Journal of Combinatorial Optimization, Vol. 8/4 (2004), pp. 495-502.